Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 26/177 (14%)

Query: 11  HYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSG 70
           H   L   L R + +   AAD++Q +F R+ A A                        + 
Sbjct: 19  HRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPL---------------------AD 57

Query: 71  IESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAI-GTHLVAPSSEFILAQQRVLARVV 129
           I  PRA L  V + L  +  +RR + Q ++   A +   H+ +P   ++L +   L  + 
Sbjct: 58  IREPRAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLE--TLQALD 115

Query: 130 ETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRVFAELR 186
           E ++ L P  R+ FL  +  G   AEI Q+L + + +V +++ +A   C  + AEL+
Sbjct: 116 ELLDGLKPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC--LLAELQ 170