Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 11  HYADLRRQLTRDLRDPHYAADIAQSSFERVFA-QATKSLGAARGTGAEVAAPDDAKDAGS 69
           H+  L+  L R L +   AAD+A  +F R+ + Q     G                    
Sbjct: 19  HHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFG-------------------- 58

Query: 70  GIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVV 129
               PRALL  +A+ L +D  RR+ V + ++   A +    V PS E        L R+ 
Sbjct: 59  --NEPRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEV-PSPETRWLILETLYRID 115

Query: 130 ETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDC 178
             +  +P R RQVFLL +  G T A+IA+QL ++ + + + +  A + C
Sbjct: 116 AMLRDMPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164