Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 67.8 bits (164), Expect = 3e-16
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 22/179 (12%)

Query: 1   MRDLVQELVAHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAA 60
           M  L+     HY DL + LTR + D   AAD+AQ ++ ++                E A 
Sbjct: 6   MSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLV------------NIDEQAV 53

Query: 61  PDDAKDAGSGIESPRALLFRVARNLCIDDARR-RKVAQEWVGTHAAIGTHLVAPSSEFIL 119
           P         +   R+ +FRVA NL ID  RR +++A     +  A      AP+ E  L
Sbjct: 54  P---------VLHARSFIFRVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAAL 104

Query: 120 AQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDC 178
             +  L  + + + +LP   RQ  LL R  G T+ ++AQ+L ++E  VAK++ +A   C
Sbjct: 105 LARERLQILDQALLQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163