Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 30/166 (18%)

Query: 11  HYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSG 70
           HY +L    TR LR    A D+   +F RV     +                        
Sbjct: 10  HYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPREQ----------------------- 46

Query: 71  IESPRALLFRVARNLCIDDARR---RKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLAR 127
           +E PRA L + ARN+ +D  RR   R+  +       A G+       E  +    +   
Sbjct: 47  VEQPRAYLHQAARNIAVDGFRREDRRQALEREAFEEGATGSG----DPEAYVHALELADS 102

Query: 128 VVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLR 173
           V   + +LP   RQVF+  +  G T+AEIA+++ +++  V K+++R
Sbjct: 103 VERALAELPLNCRQVFIWQKLEGLTQAEIAERMGLSKNMVEKYMIR 148