Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 10  AHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGS 69
           +H+  LR  L   +    +AAD+AQ +F R+      S                      
Sbjct: 18  SHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMS---------------------- 55

Query: 70  GIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVV 129
            ++ PRA L  +AR L ID  RRR + + +    A +    V PS E  L     L R+ 
Sbjct: 56  PLKEPRAYLSSIARGLMIDQFRRRALERAYQEGLAHLPEAEV-PSEEDKLVILDSLERLD 114

Query: 130 ETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRV 181
             +++L PR RQ FLL +  G +  ++AQ+L ++   V + L +A   C R+
Sbjct: 115 RALQQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRL 166