Pairwise Alignments

Query, 295 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  110 bits (275), Expect = 4e-29
 Identities = 80/294 (27%), Positives = 149/294 (50%), Gaps = 17/294 (5%)

Query: 6   VQHLVNGLVMGAVVALPALGLTLIFSVLGFINFSIAAQMTVGAYGGWLVNTHLHW----- 60
           +Q LVNGL +G+V  L A+G T+++ ++G INF+      + AY   +    L +     
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIES 65

Query: 61  -PLVPV--LVAAFALAGLVGVVGDRLALVPMRRKISAHTPLMVAIVSIALNLALENALRF 117
            PL+ +  L+    + G+ G V +R+A  P+R      T L   I +I ++L L+N  + 
Sbjct: 66  FPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNS----TRLAPLISAIGISLILQNYAQI 121

Query: 118 GFGSDLNSFEMPIAR----DVQFAGIRVGPQQVHNLGIALAIAVVLAAFFTVTRVGKAMR 173
             G+        +A     D+    +++   +V  L  A A   +L      T++G+  R
Sbjct: 122 AQGAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCR 181

Query: 174 AVADNADLARLKGIDPTRLSNLATFIGMGLAGIGGALLAIDTSV-DPSTGSRLLLIIFSA 232
           A   +  +A + GI+  R+ +    IG  +A + G L+ ++    D   G  + +  F+A
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTA 241

Query: 233 SVLGGLTSLTGAVLGALLIGMVSEVSLLVISPVYQSATAFAAILLVLLIRPSGL 286
           +VLGG+ SL GA+LG +++G+   +   +I+  Y+   +F+ ++++L+ RP GL
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGL 295