Pairwise Alignments

Query, 323 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  134 bits (338), Expect = 3e-36
 Identities = 98/308 (31%), Positives = 147/308 (47%), Gaps = 34/308 (11%)

Query: 4   YLVFMATLAGIYALLSLGLVTIWGQGGMVNLGLVGFYAVGAYASAL-LSNAGIPIGISLM 62
           YL+ +  L  IY LL LGL  + G  G+++LG V FYA+GAY  AL     G+     L 
Sbjct: 116 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLP 175

Query: 63  CAALMAGAVGVVLSYLTRPLRGDYLAIVSLGFAEVIRLVATNEKWLTGGSDGLS------ 116
            AA+ A   G +L +    + GDYLAIV+LGF E+IRLV  N    TGG +G+       
Sbjct: 176 LAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPVPSPTF 235

Query: 117 -GIRSPLKAELGAI--HPWFYL------------LLVWAIVAAAAFGLVRLFRSPYGRAL 161
            G+    +A+ G I  H +F +            ++++ +V A  +   RL R P GRA 
Sbjct: 236 LGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAW 295

Query: 162 RAVRDDEQVAAVAGKPVLQLKLKTFFVGAALSGLAGGIYAHLTSYIAPDGFVPLLTIYIF 221
            A+R+DE      G   + +KL  F +GA+ +GLAG  +A    ++ P  F    +  I 
Sbjct: 296 EALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALIL 355

Query: 222 LAATAGGYTRVVGALAGSLAVVALLESTRFIAAVIPGLTAVQVASLRELVIAVSLIVIMQ 281
                GG    VG +  +           F+  V P L     +  R L+  V ++V+M 
Sbjct: 356 AIVVLGGMGSTVGVVIAA-----------FVLTVAPELLR-SFSEYRVLLFGVLMVVMMI 403

Query: 282 LKPEGVFQ 289
            +P G+ +
Sbjct: 404 WRPRGLIR 411