Pairwise Alignments

Query, 323 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

 Score =  130 bits (327), Expect = 6e-35
 Identities = 97/308 (31%), Positives = 145/308 (47%), Gaps = 34/308 (11%)

Query: 4   YLVFMATLAGIYALLSLGLVTIWGQGGMVNLGLVGFYAVGAYASAL-LSNAGIPIGISLM 62
           YL+ +  L  IY LL LGL  + G  G+++LG V FYA+GAY  AL     G+     L 
Sbjct: 126 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSVLP 185

Query: 63  CAALMAGAVGVVLSYLTRPLRGDYLAIVSLGFAEVIRLVATNEKWLTGGSDGLS------ 116
            AA+ A   G +L +    + GDYLAIV+LGF E+IRLV  N    TGG +G+       
Sbjct: 186 LAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPAPSPTF 245

Query: 117 -GIRSPLKAELGA--IHPWF------------YLLLVWAIVAAAAFGLVRLFRSPYGRAL 161
            G+    +A+ G   IH +F               +++ +V A  +   RL R P GRA 
Sbjct: 246 FGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVVLAVLYIKHRLTRMPVGRAW 305

Query: 162 RAVRDDEQVAAVAGKPVLQLKLKTFFVGAALSGLAGGIYAHLTSYIAPDGFVPLLTIYIF 221
            A+R+DE      G   + +KL  F +GA+ +GLAG  +A    ++ P  F    +  I 
Sbjct: 306 EALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFESALIL 365

Query: 222 LAATAGGYTRVVGALAGSLAVVALLESTRFIAAVIPGLTAVQVASLRELVIAVSLIVIMQ 281
                GG    VG +  +           F+  V P L     +  R L+  V ++++M 
Sbjct: 366 AIVVLGGMGSTVGVVIAA-----------FVLTVAPELLR-SFSEYRVLLFGVLMVLMMI 413

Query: 282 LKPEGVFQ 289
            +P G+ +
Sbjct: 414 WRPRGLIR 421