Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 803 a.a., ATP-dependent helicase, DEAD/DEAH box family, associated with Flp pilus assembly from Sphingobium sp. HT1-2

 Score =  271 bits (692), Expect = 3e-76
 Identities = 226/664 (34%), Positives = 317/664 (47%), Gaps = 84/664 (12%)

Query: 25  QAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVVYVSPLKA 84
           Q++   A + G   L+ APTG+GKTL  FL  L +L+      G   D    +YVSPLKA
Sbjct: 24  QSDMLLAAQRGEHALLVAPTGAGKTLAGFLPTLADLI------GNPADGLHTLYVSPLKA 77

Query: 85  LSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPHVLVTTPE 144
           L+ D+R NL  P+         +GLP   IR   RTGDTP   + +   RPPH+L+TTPE
Sbjct: 78  LAVDVRRNLLTPIE-------EMGLP---IRVETRTGDTPSDRKARQRVRPPHILLTTPE 127

Query: 145 SLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALSLERLQARCLAHSGVRPVRI 204
           SL +LL       +   +R+VIVDE+HA A  KRG  L LS+ RLQA    +  +R  R+
Sbjct: 128 SLSLLLSYPDAALLFEHLRTVIVDEVHAFATQKRGDLLNLSMARLQA---INPDLR--RV 182

Query: 205 GLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGYA-KQRDLALELPPTPLEAVMSGG 263
            LSAT   +D    +L        DG  D     +G A  + D+ + +P   +      G
Sbjct: 183 ALSATVADVDAYRAWLA------PDGDIDAVTPVLGEAGAEPDVTILIPEGRVPWSGHSG 236

Query: 264 QW--TQVYARVAELVWLHKTTLVFVNTRRMAERTARHLGDILGKEA-VAAHHGSLSKETR 320
           ++  +QV A +A      +TTLVF NTR +AE   + L  +      +A HHGSLS E R
Sbjct: 237 KYAASQVMAEIAA----RQTTLVFCNTRGLAELIFQELWSVNDANLPIAIHHGSLSIEAR 292

Query: 321 LDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIATFLQRAGRSGHAVGGVP 380
              E  +  G L+ LVATASL+LG+D G+VD V Q+G+P+  +  LQR GR+ H +    
Sbjct: 293 RKVETAMAAGKLRALVATASLDLGVDWGNVDCVIQMGAPKGSSRLLQRIGRANHRLDMAS 352

Query: 381 KARLFPQSRDELVECAALLDCIRRGELDALRILPAPLDVLAQQIVAETACREWNEEELFT 440
           +A L P +R E +E  A LD +  GE DA    P  LDVLAQ ++A      + EEEL  
Sbjct: 353 EAILIPGNRFEYLEARAALDAVEAGERDADDFRPGALDVLAQHVMAIACAGPFREEELLA 412

Query: 441 LVRRAWPYAQLTRKSYMDVVRMVSEGFATPQGQRAGHVHR--DAVNHLLRERKGA----- 493
            VR A PY+ LT + +  V+  +  G         G+  R  D    L+RE  G      
Sbjct: 413 EVRSATPYSALTDEGFAHVLHFIEGG---------GYALRAYDRFKRLVREADGTWRVSH 463

Query: 494 ----RMTALTSGGTIPETGDYTVVLEPQADKIGTVNEDFAIESLAGDVFQLGNTSYRILK 549
               +   + +G  + +      V      K+GTV E FA     GD F     +  +++
Sbjct: 464 PKFIQQHRMNAGIIVDQPA--LAVRFANGRKLGTVEEGFAATLRPGDSFFFSGMALEVVR 521

Query: 550 IEPGRVRVEDAHGVAPNIPFWLGEAPGRSDELSHGVSRLRAE----------VAQALEAG 599
           ++   + V  A   +  IP W G     S  L+  V    AE          V + LE  
Sbjct: 522 MDTSDLVVR-ATAKSARIPSWGGTRMAMSTRLADRVRHFLAEPDAWHRFPDDVREWLEVQ 580

Query: 600 GRDAAM----RLLTQTFGLDEEAARQIVEHLA---HAHAVLGTLPTQRTLILERFFDASG 652
              +A+    +LL +TF    E    +V +     +AH  LG L T+R        DA G
Sbjct: 581 RTRSALPQPGQLLVETF--PHEGRHYMVCYSFEGWNAHQSLGMLLTRR-------MDAQG 631

Query: 653 GMQL 656
            M L
Sbjct: 632 LMPL 635