Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 100/367 (27%), Positives = 149/367 (40%), Gaps = 53/367 (14%)

Query: 18  FPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETA-- 75
           +  PT  Q  A PA+  GRD +VAA TG+GKT    L  L+ L      P G PD++   
Sbjct: 21  YTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLF-----PAGHPDKSQRH 75

Query: 76  ------VVYVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQ 129
                 V+ ++P + L+  +  +          ++ A  LP V        G  PQ    
Sbjct: 76  GPRQPRVLVLTPTRELAAQVHDSF---------KVYARDLPLVSACIFGGVGMNPQI--- 123

Query: 130 QSLRRPPHVLVTTPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALSLERL 189
           Q++ +   VLV  P  L  L G   G+  L  V  +++DE   +        L +     
Sbjct: 124 QAIAKGVDVLVACPGRLLDLAGQ--GKVDLAHVEILVLDEADRM--------LDMGFIHD 173

Query: 190 QARCLAHSGVRPVRIGLSAT-QKPIDEVARFLVGAGALRADGTADCAVVDIGYAKQRDLA 248
             + LA    +   +  SAT  K I ++A  L+     R + T     V+    +   L 
Sbjct: 174 VKKVLARLPAKRQNLLFSATFSKDITDLADKLLH-NPERIEVTPPNTTVERIEQRVYRLP 232

Query: 249 LELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLGDILGKEAV 308
                  L  +++ G W QV              LVF  T+  A R A +L +  G  A 
Sbjct: 233 ASHKRALLAHLITLGAWEQV--------------LVFTRTKHGANRLAEYL-EKQGLTA- 276

Query: 309 AAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIATFLQR 368
           AA HG+ S+  R  A    K  +++VLVAT     GLDI  +  V     P     ++ R
Sbjct: 277 AAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHR 336

Query: 369 AGRSGHA 375
            GR+G A
Sbjct: 337 IGRTGRA 343