Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 91/375 (24%), Positives = 146/375 (38%), Gaps = 74/375 (19%)

Query: 18  FPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVV 77
           + +PT  QA+A PA+ AGRD + AA TG+GKT    L  L  L   G +     +    +
Sbjct: 21  YTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVAS--NSIRAL 78

Query: 78  YVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPH 137
            + P + L+  +  N+         E A     ++ + T    G      +   LRR   
Sbjct: 79  VLVPTRELAEQVHNNV--------REYA----ENLPLTTYAVYGGVSINPQMMRLRRGVD 126

Query: 138 VLVTTPESLYVLLGSTSGRRMLGTVRSVIVDE---------------IHAVAASKRGSHL 182
           +LV TP  L  L    + +     V+++++DE               ++A    KR + L
Sbjct: 127 LLVATPGRLLDLFRQNAVK--FNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLL 184

Query: 183 ALSLERLQARCLAHSGVR-PVRIGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGY 241
             +    Q R LA   +  P+ I +S        V ++L                V +  
Sbjct: 185 FSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWL----------------VPVDK 228

Query: 242 AKQRDLALELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAER-TARHLG 300
            ++ DL   L        +   +W QV              LVF  TR   ++   R L 
Sbjct: 229 KRKADLFCHL--------LRKQRWKQV--------------LVFAKTRNGVDQLVERLLA 266

Query: 301 DILGKEAVAAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPR 360
           + +  + +   HG   + TR  A    K   ++VLVAT     GLDI D+ +V  +  P 
Sbjct: 267 EGVNADGI---HGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLPLVVNLDLPI 323

Query: 361 AIATFLQRAGRSGHA 375
               ++ R GR+G A
Sbjct: 324 VAEDYVHRIGRTGRA 338