Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score = 84.3 bits (207), Expect = 2e-20
 Identities = 103/364 (28%), Positives = 152/364 (41%), Gaps = 48/364 (13%)

Query: 18  FPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVV 77
           F  PT  QA A P    GRD  V A TGSGKT    L  L+ LV    +  G   E   +
Sbjct: 20  FVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV----DLSGPRVEIRAL 75

Query: 78  YVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPH 137
            + P + L+      +             L      I++ + TG    +E+   LR+ P 
Sbjct: 76  ILLPTRELAQQTLKQVQ------------LFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD 123

Query: 138 VLVTTPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALSLERLQARCLAHS 197
           VL+ TP  L   L +  G   L  V+ +I+DE    A        A  +ERL   C    
Sbjct: 124 VLIGTPGRLLEQLNA--GNLDLSHVQVLILDE----ADRMLDMGFAEDMERLCKECEN-- 175

Query: 198 GVRPVRIGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGYAKQRDLALELPPTPLE 257
             R   +  SAT            G  ALR        + D  +     ++     T  +
Sbjct: 176 --REQTLLFSAT-----------TGGAALR--DIIGKVLKDPEHLMLNSVSQLAEGTRQQ 220

Query: 258 AVMSGGQWTQVYARVAELVWLHKT---TLVFVNTRRMAERTARHLGDILGKEAVA-AHHG 313
            + +     Q   ++A+ +  ++T    ++F NTR MA+R   HL   + K+  A   HG
Sbjct: 221 IITADHD--QHKEQIAQWLLANETFDKAIIFTNTRAMADRIYGHL---VAKDVKAFVLHG 275

Query: 314 SLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIATFLQRAGRSG 373
              ++ R  A +R K+G+ KVLVAT     GLDI  +D+V     PR+   ++ R GR+G
Sbjct: 276 EKDQKDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTG 335

Query: 374 HAVG 377
            A G
Sbjct: 336 RAGG 339