Pairwise Alignments

Query, 556 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 511 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  404 bits (1039), Expect = e-117
 Identities = 224/506 (44%), Positives = 319/506 (63%), Gaps = 9/506 (1%)

Query: 29  VRNVSFDIAPGEMVGIVGESGSGKTQAARAIMGLTPPPLVRTAGRILFEGEDLTQAKPAR 88
           V+ +  D+  GE + +VGESGSGK+Q    IMGL     +   G   + G +L       
Sbjct: 4   VKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGI-IEGSAKYRGHELIGLPVNE 62

Query: 89  LRELRGARVGMVFQEPMTSLNPSMTIGKQLVEALALHRRDLSPAARRERILDMLARVGIR 148
           L ++RGA++ M+FQEPMTSL+P   IG Q+ E +  HR   S    R R+L++L  VGI 
Sbjct: 63  LNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGG-SKRQARARVLELLKLVGIP 121

Query: 149 DPKGALDAWPHEFSGGMRQRMMLASVMLLEPALLIADEPTTALDAVVQRDVLELMVGLTR 208
           +P+  +D++PHE SGG RQR+M+A  +  EP +LIADEPTTALD  +Q  +L+L+  L +
Sbjct: 122 EPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQ 181

Query: 209 EHRTAVLMISHDLPMVARFTQRMVVMRHGEVMETGRTDDMLEQPRHAYTRELLQAMPH-R 267
               AV++I+HDL +V  F  R+ VMR GE++ETG T+D+ E+P+  YT+ LL A P   
Sbjct: 182 RFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEPSGH 241

Query: 268 LPARQVPDEAPVV-EVRNLVVDYAGHRRLFAKTVPKRALHGIDLVVRPREVVAVVGGSGS 326
            PA  V  EAPVV   +N+ +DY       +K+   RA+  +++ +   + + +VG SGS
Sbjct: 242 KPA--VGSEAPVVLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVDLHQGQTIGIVGESGS 299

Query: 327 GKTTLGRTIAGLLQPSGGEIMFRGRPILRSDA-GWSDYRLQCQMVFQDPYASLDPRMTIG 385
           GK+TLGR +  L+  S G I F    I   D       R   Q+VFQDPY SL PR T+G
Sbjct: 300 GKSTLGRALLRLIV-SEGRIFFGKTEITGLDRKAMRPLRRHLQLVFQDPYGSLSPRQTVG 358

Query: 386 QLVGEGLRL-VKGMSTADRARRVQEVLEEVGLGTGFAPRYAHELSGGQRQRVAIARAIVR 444
           +++ EGL +  + +S A+R +R  E L+EVGL      RY HE SGGQRQR+AIARAI+ 
Sbjct: 359 EIITEGLFVHEQQLSRAERDKRAIEALKEVGLDPAARNRYPHEFSGGQRQRIAIARAIIL 418

Query: 445 RPAFVIADEPVSALDVTVRAQVLALFAELQKRHGFSCLFISHDLGVVEQVADRVVVMQDG 504
           +P  VI DEP SALD +V+ QV+ L  +LQK HG S +FISHDL V++ ++D V+VM++G
Sbjct: 419 KPEVVILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIVMRNG 478

Query: 505 RIVEQGSRDTVFDAPTQDYTRKLLSA 530
           +IVE+G  D +F  PT +YT+ L+ +
Sbjct: 479 KIVEEGETDAIFSRPTAEYTKTLIKS 504



 Score =  172 bits (436), Expect = 3e-47
 Identities = 106/244 (43%), Positives = 143/244 (58%), Gaps = 7/244 (2%)

Query: 304 ALHGIDLVVRPREVVAVVGGSGSGKTTLGRTIAGLLQPSG---GEIMFRGRPILRSDAG- 359
           A+ GID+ V+  E +AVVG SGSGK+     I GLL  +G   G   +RG  ++      
Sbjct: 3   AVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGIIEGSAKYRGHELIGLPVNE 62

Query: 360 WSDYR-LQCQMVFQDPYASLDPRMTIGQLVGEGLRLVKGMSTADRARRVQEVLEEVGLGT 418
            +D R  +  M+FQ+P  SLDP   IG  + E +   +G S      RV E+L+ VG+  
Sbjct: 63  LNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGGSKRQARARVLELLKLVGIPE 122

Query: 419 GFA--PRYAHELSGGQRQRVAIARAIVRRPAFVIADEPVSALDVTVRAQVLALFAELQKR 476
                  Y HELSGGQRQRV IA A+   P  +IADEP +ALDVT++AQ+L L   LQ+R
Sbjct: 123 PERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQR 182

Query: 477 HGFSCLFISHDLGVVEQVADRVVVMQDGRIVEQGSRDTVFDAPTQDYTRKLLSAIPALEP 536
            G + + I+HDLGVV   A+RV VM+ G IVE G+ + +F+ P  DYT+ LL A P+   
Sbjct: 183 FGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEPSGHK 242

Query: 537 TAGG 540
            A G
Sbjct: 243 PAVG 246