Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 72.0 bits (175), Expect = 6e-18
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 1   VFTRYYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLI 60
           VF      +   + R V  + TA+DLVQE + R     +   + +D    L R A NL I
Sbjct: 24  VFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALD--TYLLRCAGNLAI 81

Query: 61  DRHRHDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVR 120
           D  R +  R       V   E         A  A  PE AV     +Q +  T+  LP R
Sbjct: 82  DHLRSESSRERVAEAAVPVSE---------ASLAQAPEQAVEVDHDLQRIEATLRALPER 132

Query: 121 CRQAFMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACLEQQAGT 170
            RQ F+L++  G  ++E+A+ M ++   VEKH+   L+AC+A + + A T
Sbjct: 133 TRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPAST 182