Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 9   LLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDP-RALLYRTARNLLIDRHRHDQ 67
           LL  L R V +  TA DL+QE+Y RV  ++  GE  ++     +++TARNL +D   H +
Sbjct: 17  LLRTLQRMVGNPSTAEDLLQETYLRV--SRALGERPIEHIEPFVFQTARNLALD---HLR 71

Query: 68  VRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVRCRQAFML 127
            RR      VD D  +E L  +AAP A   E A  + Q ++ L  ++ +L  R ++ F+L
Sbjct: 72  ARRVQARMLVD-DVPDEVLHSVAAP-ATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFIL 129

Query: 128 HKFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACLEQ 166
            +  G ++ E+AE++ ++   V+K +K+ +  C    E+
Sbjct: 130 SRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAER 168