Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 2   FTRYYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLID 61
           F  +Y EL+    R ++ +  A DL  +++ RVL   +  E +  PRA L++ ARN+ +D
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPR--EQVEQPRAYLHQAARNIAVD 64

Query: 62  RHRHDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVRC 121
             R +  R+A   E  +            A  + +PE  V + +   ++   + ELP+ C
Sbjct: 65  GFRREDRRQALEREAFEE----------GATGSGDPEAYVHALELADSVERALAELPLNC 114

Query: 122 RQAFMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACLEQQA 168
           RQ F+  K EGL+ AE+AE MG++  MVEK++   L+  R  L+  A
Sbjct: 115 RQVFIWQKLEGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHLDVSA 161