Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 72.4 bits (176), Expect = 4e-18
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 9   LLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLIDRHRHDQV 68
           LL +L RS+  +  A DL Q+++ R+L  ++  +   +PRA L   A+ L+ D  R   +
Sbjct: 23  LLAWLQRSMACRQRAEDLSQDTFVRLL-GREQLDTPREPRAFLAAVAKGLMFDHFRRAAL 81

Query: 69  RRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVRCRQAFMLH 128
            +A L E     E E+            PE+     + ++A+   +G+L  + R AF+  
Sbjct: 82  EQAYLAELALIPEAEQP----------SPEMQHLILEDLKAIDRLLGKLSSKARAAFLHS 131

Query: 129 KFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACL 164
           + +G+ HAE+AE +G++V  V ++I  G++ C   L
Sbjct: 132 RLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVAL 167