Pairwise Alignments

Query, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 72.4 bits (176), Expect = 3e-18
 Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 23  LRGWLGKKLGDMHQGADLAHDTFVRLLAKQEAVAIQEPRAFLTTVAQRVLANHWRRQQLE 82
           L  +L  +LG      D+AHD ++R+L +  +  I+ PRAFL   A  ++ +  RRQ + 
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 83  RAY-LEALAQVPQAMAPSEEERAILLQTLTEIDRLLNGLPPPVRRVFLLTQLDGLGHAEV 141
           +A  L+AL    +  +   +    L Q L  + + L+ L  P R  FLL +++GL H ++
Sbjct: 68  QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSHQQI 127

Query: 142 AALMSISITTVKRYLVKAAMQC 163
           A  + IS + V++++V A   C
Sbjct: 128 AERLGISRSLVEKHIVNAMKHC 149