Pairwise Alignments

Query, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  159 bits (403), Expect = 2e-44
 Identities = 75/164 (45%), Positives = 115/164 (70%), Gaps = 1/164 (0%)

Query: 7   PAHPQIESLYSDHHGWLRGWLGKKLGDMHQGADLAHDTFVRLLAKQEAVA-IQEPRAFLT 65
           P  P + +LY +H GWL  WL +++G+    ADL+ DTF+R+LA  + +A I+EPRA+L 
Sbjct: 7   PPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLL 66

Query: 66  TVAQRVLANHWRRQQLERAYLEALAQVPQAMAPSEEERAILLQTLTEIDRLLNGLPPPVR 125
           TV +R+L+N  +R+ LE+AYL+ALAQ+P+   PS E+R +LL+TL  +D LL+GL P +R
Sbjct: 67  TVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIR 126

Query: 126 RVFLLTQLDGLGHAEVAALMSISITTVKRYLVKAAMQCYFADAQ 169
           + FL +QL+GLG+AE+   + +   +VKRY+ +A   C  A+ Q
Sbjct: 127 KAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAELQ 170