Pairwise Alignments

Query, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  166 bits (421), Expect = 1e-46
 Identities = 82/162 (50%), Positives = 116/162 (71%), Gaps = 5/162 (3%)

Query: 7   PAHP----QIESLYSDHHGWLRGWLGKKLGDMHQGADLAHDTFVRLLAKQEAVAI-QEPR 61
           PA P    Q+++LY++HHGWL+GWLG+KLG+    ADLAHDTFVRLL++Q       EPR
Sbjct: 3   PAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPR 62

Query: 62  AFLTTVAQRVLANHWRRQQLERAYLEALAQVPQAMAPSEEERAILLQTLTEIDRLLNGLP 121
           A LT +A+ ++ + WRRQ +ERAYLEA+A +PQ   PS E R ++L+TL  ID +L  +P
Sbjct: 63  ALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMP 122

Query: 122 PPVRRVFLLTQLDGLGHAEVAALMSISITTVKRYLVKAAMQC 163
             VR+VFLL+QLDGL +A++A  + +S+ T+KR +  A + C
Sbjct: 123 ARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164