Pairwise Alignments

Query, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 8e-18
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 16  YSDHHGWLRGWLGKKLGDMHQGADLAHDTFVRLLAKQEAVAIQEPRAFLTTVAQRVLANH 75
           + DH+  L G   +KL    Q  DL HD FVR+L       +++PRA+L   A+ +  + 
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPRE-QVEQPRAYLHQAARNIAVDG 65

Query: 76  WRRQQLERAYLEALAQVPQAMAPSEEERAI-LLQTLTEIDRLLNGLPPPVRRVFLLTQLD 134
           +RR+   +A LE  A    A    + E  +  L+    ++R L  LP   R+VF+  +L+
Sbjct: 66  FRREDRRQA-LEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLE 124

Query: 135 GLGHAEVAALMSISITTVKRYLVK 158
           GL  AE+A  M +S   V++Y+++
Sbjct: 125 GLTQAEIAERMGLSKNMVEKYMIR 148