Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  223 bits (569), Expect = 4e-63
 Identities = 123/332 (37%), Positives = 189/332 (56%), Gaps = 21/332 (6%)

Query: 1   MFRFAASRIAMAIPTLLIVAVSVFVLIRLIPGDPAQLLLGDLAT-PASLAELRARLGLDR 59
           M  F A R+ + IPT   + +  F LIRLIPGDP ++++G+    P   A+   RLGL++
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 60  SVPAQFGIWFGHVLQGDLGTSINSGQDVLSLVTERFLISGRIVLVAVALAAMVAVPAGMI 119
            +P Q+  + G + QGDLG S+ + + V       F  +  +   A+  A +V + AG+I
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 120 AAWKQNRAPDLLLVGAATLLVSIPTFWLGLLLLLLFGLKLGWLPVVGYVGISED------ 173
           AA K+    D  ++G +    S+P FW GL+L++ F + LGW PV G + +  D      
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 174 --------------WKNGLLYLLLPVLTLFLHEIGVLMRMARASTLEVLRLDYITHARAK 219
                         +K+ +++L+LP + L    + V+ RM R+S LEVLR DYI  ARAK
Sbjct: 181 FMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK 240

Query: 220 GLSERAVLMRHAFKNAFGPTWTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDAIFARDY 279
           GLS   V+  H  +NA  P  T+ GL +G LL G  + ET+F+ PG+G+ L++AI ARDY
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 280 PVIQGCLLFVAVIYVAVNLVIDLCYPFFDPRV 311
           PV+Q  +L +A + + VN V+D+ Y   +PR+
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGLANPRI 332