Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Escherichia coli ECRC98

 Score =  206 bits (523), Expect = 8e-58
 Identities = 120/335 (35%), Positives = 184/335 (54%), Gaps = 24/335 (7%)

Query: 1   MFRFAASRIAMAIPTLLIVAVSVFVLIRLIPGDPAQLLLGDLA-TPASLAELRARLGLDR 59
           M +F   R+ + IPT + + +  F  + +IPGDP  ++ G+   +P   A+L A LGLD+
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 60  SVPAQFGIWFGHVLQGDLGTSINSGQDVLSLVTERFLISGRIVLVAVALAAMVAVPAGMI 119
            +  Q+  +   V+ GDLG S+ S   V      RF  +  + + A+  A  V +P G++
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVL 120

Query: 120 AAWKQNRAPDLLLVGAATLLVSIPTFWLGLLLLLLFGLKLGWLPVVGYV----------- 168
           AA K+    D   VG A    S+P FW G++L++L  +     PV G V           
Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP 180

Query: 169 ------------GISEDWKNGLLYLLLPVLTLFLHEIGVLMRMARASTLEVLRLDYITHA 216
                       G   ++ + + +++LP + L    + V++RM R+S LEVL  DYI  A
Sbjct: 181 LTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

Query: 217 RAKGLSERAVLMRHAFKNAFGPTWTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDAIFA 276
           RAKGL+   V++ HA +NA  P  T+IGL +G LL G  + ET+F+ PGLGR L+DA+  
Sbjct: 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR 300

Query: 277 RDYPVIQGCLLFVAVIYVAVNLVIDLCYPFFDPRV 311
           RDYPV+QG +L VA + + VNL++DL Y   +PR+
Sbjct: 301 RDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335