Pairwise Alignments

Query, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  166 bits (419), Expect = 3e-45
 Identities = 148/550 (26%), Positives = 245/550 (44%), Gaps = 56/550 (10%)

Query: 4   LLPIVAAALLAT---GVSASAQTLSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSR 60
           L  + A +LLA    G +A  ++L        +  D      A D   A   ++ ++   
Sbjct: 7   LSAMFATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDAAEPLYNRLVEFE 66

Query: 61  DGGK-LEPALASSWK-ALDDKTWEFKLRTDIKWQDGTPF------SADDIVFSFQRS--- 109
            G   + PALA+ W  + D  T+ F LR  +K+     F      +ADD++F+F R    
Sbjct: 67  KGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRMLDP 126

Query: 110 -----RNVPGSVASYSGAL--RTVESVTAKDPATLIVKTNTPNPMLPLEIASIY--IVSK 160
                +  P     ++G    + +  V   DP T+++  NT +      IA  +  I+S 
Sbjct: 127 DHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAILSA 186

Query: 161 HVGEK----SKTEDYNAGRAVVGTGPYKFVSYVPGDRTVFERNPGYYGPKPL-WEKVNYR 215
              E+     K  D N  +  +GTGP+ F  Y    +  +  N  Y+ P  +  +++ + 
Sbjct: 187 EYAEQLLKAGKPSDIN--QKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLIFA 244

Query: 216 FINNGAARTAALLAGDVDVIDKVAVTDVEKLRKDPKVSVYTYPGLRVLLLQPTFKAGPNE 275
              + + R   L AG+  V       DV+ L+ DP + + T PG         F  G   
Sbjct: 245 INTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKLLTKPG---------FNLG--- 292

Query: 276 FITDNAGKPLEKNPLLDVRVRQALSLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDV 335
           +I  N    +   P   + VRQAL +A+N+++I++ V QG    A   MP   + Y+  +
Sbjct: 293 YIAYN----VRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSI 348

Query: 336 KDIAYNAEQAKKLLAEAGFPQGFQI---AIHVPGDRYPQAPETVQAVAQFWSRIGVKTKV 392
           KD AYN E+AK+LL  AG  +G +I   A+ V     P A    + +   W++IG+K K+
Sbjct: 349 KDAAYNPEKAKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKI 408

Query: 393 EVVPWAVYSGRANKNEYAVSVIAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNES 452
               W  Y  R    E+ VS+I W    G+     L TL + DA    G NN+  + + +
Sbjct: 409 VSYEWGEYIKRTKNGEHDVSLIGWTGDNGDPD-NWLGTLYSCDA---IGGNNYSMWCDPA 464

Query: 453 VDKALDAATVEFDAKRREAIFRHAAKLVTDDVGQIPLYH---YQNIWAAKKGLKVVPLLS 509
            DK +  A V  D ++R  +++ A +L+   V   P+ H    Q + A  +G KV P   
Sbjct: 465 YDKLIKQAKVVTDREQRTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGR 524

Query: 510 DRTTAMQVTP 519
           +  + + +TP
Sbjct: 525 NVFSGVSITP 534