Pairwise Alignments

Query, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  146 bits (369), Expect = 2e-39
 Identities = 123/477 (25%), Positives = 209/477 (43%), Gaps = 44/477 (9%)

Query: 60  RDGGKLEPALASSWKALDD-KTWEFKLRTDIKW------QDGTPFSADDIVFSFQRS--- 109
           R G  + P LA+ W+  DD KT+ F LR  +K+      +   PF+ADD++F+F R    
Sbjct: 66  RGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDK 125

Query: 110 -----RNVPGSVASYS--GALRTVESVTAKDPATLIVKTNTPNPM----LPLEIASIYIV 158
                +  P     ++  G  + +  V   D  T+    N  +      L +  ASI   
Sbjct: 126 DNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSA 185

Query: 159 --SKHVGEKSKTEDYNAGRAVVGTGPYKFVSYVPGDRTVFERNPGYYGPKPLW-EKVNYR 215
             +  + +  K  D N  +  +GTGP+ F  Y    +  F+ N  Y+ P+ +  + + + 
Sbjct: 186 EYADQLLKNGKAADIN--QKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFA 243

Query: 216 FINNGAARTAALLAGDVDVIDKVAVTDVEKLRKDPKVSVYTYPGLRVLLLQPTFKAGPNE 275
              + + R   L   +  V       D+E L+ D  + +    G  +  +          
Sbjct: 244 ITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYN------- 296

Query: 276 FITDNAGKPLEKNPLLDVRVRQALSLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDV 335
            + D      E NP+  ++VRQAL +A+++K I++ V QG    A   MP   + Y+  +
Sbjct: 297 -VMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSI 355

Query: 336 KDIAYNAEQAKKLLAEAGFPQGFQI---AIHVPGDRYPQAPETVQAVAQFWSRIGVKTKV 392
           KD A++ E+AK+LL EAG  +G +I   A+ V     P A    + +   W++IG+K K+
Sbjct: 356 KDAAFDPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKI 415

Query: 393 EVVPWAVYSGRANKNEYAVSVIAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNES 452
               W  Y  R+   E    +I W    G+     L TL   DA  G   NN+ ++  + 
Sbjct: 416 VSYEWGEYIKRSKGGEQGAMLIGWSGDNGDPD-NWLGTLYGCDAVDG---NNFSKWCYKP 471

Query: 453 VDKALDAATVEFDAKRREAIFRHAAKLVTDDVGQIPLYH---YQNIWAAKKGLKVVP 506
            D  +  A    D  +R  +++ A  ++ + V   P+ H   YQ + A  K  K+ P
Sbjct: 472 YDDLIKQAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISP 528