Pairwise Alignments

Query, 563 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 574 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  152 bits (385), Expect = 3e-41
 Identities = 151/559 (27%), Positives = 236/559 (42%), Gaps = 44/559 (7%)

Query: 20  LILLLILLVANPILRLIWDSFHTADGTLSFSSYAAALGRSRNLQALL-NSFYLGVAVTAI 78
           L++LL+L V  P+L + W  F    G       A  L  S +   LL NS  +   V AI
Sbjct: 35  LLILLVLAVLMPLLAIFWRGFSGEAGQGGGLLAARELFTSASFHWLLGNSLSVAFTVAAI 94

Query: 79  AIALGVPLALAVSRTNMPARGFTHVSVLAAFVMPNFLGAIAWILLAGPNAGWLNRLWSEV 138
            + L    A A+ RT +PA+G      L   + P+ L AIA + L G N G L  L S+ 
Sbjct: 95  VVPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIALVYLFG-NQGLLRGLLSD- 152

Query: 139 LGTDRGPFNIFSFWGLAFVIALYTYPLIYVFTKSALDLVSTELEDAASIHGAGKLRTLTR 198
                   NI+ FWG+    A+YT+P   +   SAL L    L DAAS  GAG  R  T 
Sbjct: 153 --------NIYGFWGIVLGEAIYTFPHALMILLSALSLADARLFDAASSMGAGSWRAFTS 204

Query: 199 VTLPLVLPSIVGAAILIFLESVALYGTPALIAIPAGLNLATTQIVSFFEYPLKVEQ---- 254
           +T P    ++  A  L+F  ++  +G P ++           Q+++   Y   V Q    
Sbjct: 205 ITWPASRQAVFAAFCLVFTLTITDFGVPVVVG-------GDYQVLALEAYKAVVGQQQFG 257

Query: 255 -AAAFSMPILALTVVMLYLQRRLLARKGFVSVSGKGGERRPFDVGAWKWVLLGYSALVSL 313
             A   M +L   +    +   L  R+G       GG  + F+    +     +  +V L
Sbjct: 258 RGALIGMVLLLPALFSFTVDAWLRRRQG----EAMGGRAQVFEPKPSRGRDACFLTIVLL 313

Query: 314 LTVVMPLII--LVLASLSKAWGRGFSAGNLTFANFYNIFFEQLTVRSALV--NTVTYSAV 369
           +   + ++I   V +SL   W    S       +  +  FE       L   N+VT +  
Sbjct: 314 VCAALLVVIGMAVYSSLVTFWPYNLS------LSLRHYMFEDTAGGGWLAYRNSVTMAIG 367

Query: 370 TALVCVAMGMCVAYATQRRITP--FPTLIQFLALAPVAVPGLILAIG---LYAAYAGPPF 424
           TAL+   +    AY  ++          ++ L+  P+AVPGL+L +G    +     P  
Sbjct: 368 TALIGSIVIFTGAYLMEKTQGQRLLNHALRLLSFIPMAVPGLVLGLGYVFFFNLNGNPLH 427

Query: 425 SLYGTGALVVVAFTTRFLPIAVTACGAGVRSLNPELEEAVRILGGGRLTALGKVVVPLLN 484
            LYG   L+VV     +L  A       +R L+ E E A   L         +V VP+  
Sbjct: 428 VLYGGMGLLVVCTIAHYLTTAQMTATTALRQLDGEFEAAALSLKAPLYKHFLRVTVPICL 487

Query: 485 KTLVGAFILVFVICTKELSTAVFLTGPASRVVSVLTLDLSEQGNYESLAAMGVVLVVIVT 544
             L+     +FV     +S A+FL  P + + ++  L++ + GN    AAM   L+++ +
Sbjct: 488 PALLDIIRYLFVSAMTTVSAAIFLYSPDTLLAAIAVLNMDDAGNVGGAAAMS-TLILLTS 546

Query: 545 LVVGIGMRIAGRDFMLRRS 563
               + +  A R  +LRRS
Sbjct: 547 AGASLLLAAASRG-LLRRS 564