Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 328 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  157 bits (397), Expect = 4e-43
 Identities = 84/264 (31%), Positives = 147/264 (55%), Gaps = 1/264 (0%)

Query: 35  SYKYGNNLPLTHPLNIRAQEAAERIAKETKGRVEIKIFPNNQLGGDTDMLAQVRSGGIEF 94
           S ++G     T   +I A++  + + + TKG +++K+FP++ LG    M++ VR G I+ 
Sbjct: 27  SLRFGYETSQTDSQHIAAKKFNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTIDM 86

Query: 95  FTPSALVIATLVPVAAINAVGFAFNDYTQVWAAMDGKLGAHVRGAIAKARLYAFEKMWDN 154
               +   A L PV  +  V F F D       +DGK+G  ++ ++    L      W+N
Sbjct: 87  EMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLDGKVGDDLKASLEGKGLKVLA-YWEN 145

Query: 155 GFRQTTSSKAAVATAKDMDGLKIRVPVSPLSISMFKGLGAAPASLQFSEVYSALQTKIVD 214
           G+R  T+S+A V T  D+ GLKIR   SP++I+ FK  GA P  + F+EVY+ L+T+ +D
Sbjct: 146 GWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFKVFGANPIPMPFAEVYTGLETRTID 205

Query: 215 AQENPLPIIQVAKLFEVQKFCSLTNHIWDGYWFIANGRAWEALPEDLKTIVARAINDAGM 274
           AQE+P+ ++  AK FEVQKF SLT+H +     + N   ++ L  + +  +  +  +AG 
Sbjct: 206 AQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVINKAKFDGLSPEFQQALVSSAQEAGN 265

Query: 275 QQREDIRKLNESVVGDLQAKGLSI 298
            QR+ + +  + ++  ++  G+ +
Sbjct: 266 YQRKLVAEDQQKIIDGMKEAGVEV 289