Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 336 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

 Score =  412 bits (1058), Expect = e-120
 Identities = 197/324 (60%), Positives = 250/324 (77%)

Query: 13  LSALPAAGIVTALPRIARAAEFSYKYGNNLPLTHPLNIRAQEAAERIAKETKGRVEIKIF 72
           L+   +A + TA    A AA+++YKY NNLP  HP+NIRA+EAAERIAKET G+V I IF
Sbjct: 9   LAGAGSAVLATAFVSRAHAAQYNYKYANNLPAAHPMNIRAKEAAERIAKETDGQVNISIF 68

Query: 73  PNNQLGGDTDMLAQVRSGGIEFFTPSALVIATLVPVAAINAVGFAFNDYTQVWAAMDGKL 132
           P++QLG DTD+L+QVRSGG+EFFT S L+++TL+P A+I+ +GFAF +Y  VWAAMDG L
Sbjct: 69  PSSQLGADTDVLSQVRSGGVEFFTLSPLILSTLIPNASISGIGFAFPNYESVWAAMDGDL 128

Query: 133 GAHVRGAIAKARLYAFEKMWDNGFRQTTSSKAAVATAKDMDGLKIRVPVSPLSISMFKGL 192
           G +VRG IAK  L A + +WDNGFRQ TS+   +AT  D++  KIRVPVSPL  SMFK  
Sbjct: 129 GKYVRGEIAKQNLVAMDTIWDNGFRQITSASKPIATPADLESFKIRVPVSPLWTSMFKAF 188

Query: 193 GAAPASLQFSEVYSALQTKIVDAQENPLPIIQVAKLFEVQKFCSLTNHIWDGYWFIANGR 252
            +APAS+ F+EVY+ALQT +VD QENPL II  AKLFEVQKFCS+TNH+WDG+WF+AN R
Sbjct: 189 KSAPASINFAEVYTALQTGVVDGQENPLAIISTAKLFEVQKFCSVTNHMWDGFWFLANKR 248

Query: 253 AWEALPEDLKTIVARAINDAGMQQREDIRKLNESVVGDLQAKGLSINRPAAESFRAKLRE 312
           AWE LP+DL+ IVA+ +N +G  +R D+ KLN SV  DL +KG++ N   A  FRA L+E
Sbjct: 249 AWERLPDDLRAIVAKNLNQSGKDERADVAKLNASVKEDLISKGMTFNDTDATLFRAALKE 308

Query: 313 SGFYGEWKGRFGPEAWALLEGAVG 336
           +GFY EWKG++G EAWA+LE AVG
Sbjct: 309 AGFYSEWKGKYGDEAWAILEKAVG 332