Pairwise Alignments

Query, 629 a.a., Predicted gluconate TRAP family transporter, DctM subunit from Variovorax sp. SCN45

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  195 bits (495), Expect = 4e-54
 Identities = 117/407 (28%), Positives = 208/407 (51%), Gaps = 3/407 (0%)

Query: 220 VLSGVPIAFSFALATFGYLALTTRTPLLVMVGRLDEGMSHLILLAVPLFIFLGALIEMTG 279
           +L G+P+A++  L+     A     PL  M+ ++  G++   LLA+P F+  GA++   G
Sbjct: 14  ILIGMPVAYALGLSAL-IGAWWIDIPLQAMMIQVASGVNKFSLLAIPFFVLAGAIMAEGG 72

Query: 280 MARAMIQFLASLLGHVRGGLSYVLIGAMYLVSGISGSKIADMAAIAPVLFPEMTKRGAKP 339
           M+R ++ F   L+G VRGGLS V I A      ISGS +AD A++  VL PEM ++G   
Sbjct: 73  MSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEMERKGYPR 132

Query: 340 GDLVALLSATGAQTETIPPS--IVLITIGSVTGVSIAALFTGGLLPAVVLGAALCAVVWW 397
               A+  +   Q    PPS   VL ++ +   VSIA+LF  G++P ++L A +  +   
Sbjct: 133 EFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGLLLSAVMMGLCLI 192

Query: 398 RYRREDLSGVQRYSKREIGKLLLVALPAVLLPFVIRAAVVEGVATATEVSTIGIVYAAVV 457
             ++ +    +    RE  K+   AL  ++   +I   ++ GV TATE + + +V++  V
Sbjct: 193 FAKKRNYPKGEVIPLREALKIAGEALWGLMAMVIILGGILSGVFTATESAAVAVVWSFFV 252

Query: 458 GLVVYRQFDWRRLKPMLVDTASLSGAIIFIVGCATAMAWGLTQSGFSQDLARVMGTLPGG 517
            + +YR + WR L  ++  T      ++ ++G A +  + +T       +     TL   
Sbjct: 253 TMFIYRDYKWRDLPKLMHRTVRTISIVMILIGFAASFGYVMTLMQIPSKITTAFLTLSDN 312

Query: 518 AYGFLAVSIVAFIVLGSVLEGIPAIVLFGPLLFPIAKAAGVHEVHYAMVVIFSMGIGLFA 577
            Y  L       ++LG+V++  P I++  P+L P+    GV  VH+ M+++ ++GIGL  
Sbjct: 313 RYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIMLVNLGIGLIT 372

Query: 578 PPFGVGYYGACAVSKVNPDEGIRHIWGYIGAMLVGLVIVALFPWFSI 624
           PP G   +   A+ KV+ +  ++ +  +  A+ + L+ V   P  S+
Sbjct: 373 PPVGAVLFVGSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAISL 419