Pairwise Alignments
Query, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45
Subject, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5
Score = 494 bits (1272), Expect = e-143
Identities = 298/736 (40%), Positives = 407/736 (55%), Gaps = 75/736 (10%)
Query: 138 FSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAWPPA---WHGQNLRDILV 194
FS N P GACP C GLG + +VPD + S+++ AIA W + ++GQ L +
Sbjct: 296 FSFNNPFGACPACDGLGVEQTIDPDLVVPDKARSLKQGAIAPWAKSTSPYYGQTLDALAK 355
Query: 195 TMGIDVDKPWRNLPKKTRNWILFTE--EQPTVPVYAGFTPAETRAAVRSKMEPSYQGTFM 252
++ P+ +LP++ R +LF E+ T G ET TF
Sbjct: 356 HYHFKLNVPFADLPEQAREVLLFGSGSEKITFHYDDGMRAYETSK------------TFE 403
Query: 253 GARKYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIARMS 312
G + + + T S + +++ C C+G RLK EAL+V+ AG IGEI +S
Sbjct: 404 GVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEALAVKIAGRHIGEIGELS 463
Query: 313 LARLADVLRPVARGESPGAAAPVATRRASLRQAAPGKGASHASAPDVRRTPNQSAEKRIA 372
+ A+A P Q +K+
Sbjct: 464 V---------------------------------------RAAAGWFESLPAQLTDKQNE 484
Query: 373 -AQRIAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLDE 431
A RI E+ ER+ LL++GL YL+L RS+ TLS GE QR+RLA+QI S L GV+YVLDE
Sbjct: 485 IAGRILKEIRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDE 544
Query: 432 PSAGLHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYS 491
PS GLH D E L+ L L+ GN++ VVEHD D + AD +VDVGP AG GG ++
Sbjct: 545 PSIGLHQRDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQ 604
Query: 492 GPPEGLRHVAQSHTARYLFS--AHAGPVRPPRTPRGWLKLEGLTRNNLSNLAAAFPLGVL 549
G P + S T RYL + P R P+ LKL G NNL N+ A PLG+
Sbjct: 605 GTPAEILANPASLTGRYLTGELSVGVPARRKPNPKRMLKLTGARGNNLKNVTAEIPLGLF 664
Query: 550 SAVTGVSGSGKSSLVSQALVELVAAHL-GHEPPPAEEEEGEEPAALASRTSGHIVQGMEG 608
+ +TGVSG GKS+L+ L + VA L G PA ++ ++G+E
Sbjct: 665 TCITGVSGGGKSTLLIDTLYKAVARRLNGASEAPAPFDK---------------LEGLEH 709
Query: 609 IRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRCP 668
+ +++ +DQ PIGRTPRSN ATYTG F +R+ FAG AKAR + GRFSFNV GRC
Sbjct: 710 LDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCE 769
Query: 669 TCEGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFE 728
C+G+G + +E+ F+P VY C C G R+N +TL V ++++IADVL MTV+E FF+
Sbjct: 770 ACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVTFKNKSIADVLDMTVEEGAQFFK 829
Query: 729 ADVAIERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTT 788
A ++ L+ L +GL Y+++GQ AT LSGGEAQR+KL+ EL R G TLY+LDEPTT
Sbjct: 830 AVPSVREKLETLHRVGLDYVKVGQQATTLSGGEAQRVKLSKELSRRATGRTLYILDEPTT 889
Query: 789 GLHPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAP 848
GLH DV KL L LV+ GN+V+VIEH + ++ DW++D+GP G GG IV +G P
Sbjct: 890 GLHFHDVKKLLEVLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTP 949
Query: 849 SDVARSKKSRTAPYLA 864
VA SK+S T +LA
Sbjct: 950 ETVAASKRSHTGRFLA 965
Score = 139 bits (351), Expect = 7e-37
Identities = 66/118 (55%), Positives = 93/118 (78%)
Query: 7 RSDRFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVA 66
R R + VRGAREHNL+NVD++IPRD+LVVF+G+SGSGKSSLAF T+YAE QRRY ES++
Sbjct: 23 RDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLS 82
Query: 67 PYARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAG 124
YAR+ ++ + P VD IDGL PA++++Q+ + RS+VG+VT + +R+L++R G
Sbjct: 83 AYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTG 140
Score = 131 bits (330), Expect = 2e-34
Identities = 79/204 (38%), Positives = 113/204 (55%), Gaps = 20/204 (9%)
Query: 689 PCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFEADVA---------------- 732
PC C+G R + L+V++ R I ++ ++V A +FE+ A
Sbjct: 433 PCKVCNGYRLKPEALAVKIAGRHIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKE 492
Query: 733 IERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGLHP 792
I L+ L +GL YL L + + LSGGE+QRI+LA+++ G LYVLDEP+ GLH
Sbjct: 493 IRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLASQIGSGLTG-VLYVLDEPSIGLHQ 551
Query: 793 ADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSDVA 852
D ++L L +L D GNTVIV+EH+ + D V+D+GPGAG GG IVA G P+++
Sbjct: 552 RDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEIL 611
Query: 853 RSKKSRTAPYLARWTS---PAHRE 873
+ S T YL S PA R+
Sbjct: 612 ANPASLTGRYLTGELSVGVPARRK 635
Score = 55.5 bits (132), Expect = 2e-11
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 10 RFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRY---FESVA 66
R +++ GAR +NL+NV +IP +G+SG GKS+L TLY RR E+ A
Sbjct: 640 RMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARRLNGASEAPA 699
Query: 67 PYARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAGDY 126
P+ + ++ ++ L + + Q RS+ + T + +R + AG
Sbjct: 700 PFDK----------LEGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWF--AGLP 747
Query: 127 PARQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPD 167
A+ A FS N G C C G G + E +PD
Sbjct: 748 EAKARGYGAGRFSFNVKGGRCEACQGDGVI--KIEMHFLPD 786
Score = 52.0 bits (123), Expect = 2e-10
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 24/139 (17%)
Query: 516 PVRP-PRTPRGWLKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQAL------ 568
PVR PR L + G +NL N+ P L TG+SGSGKSSL +
Sbjct: 16 PVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQR 75
Query: 569 --VELVAAHLGHEPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRLVRVDQKPIGRTPRS 626
VE ++A+ ++ + V ++G+ + ++QK + PRS
Sbjct: 76 RYVESLSAYARQFLEMMQKPD---------------VDQIDGLSPAISIEQKTTSKNPRS 120
Query: 627 NLATYTGLFDHVRKLFAGT 645
+ T T ++D++R L+A T
Sbjct: 121 TVGTVTEIYDYMRLLWART 139
Score = 29.3 bits (64), Expect = 0.001
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 654 DPGRFSFNVAKGRCPTCEGEGFVSVELLFMPSVYAP 689
+P FSFN G CP C+G G VE P + P
Sbjct: 292 EPRLFSFNNPFGACPACDGLG---VEQTIDPDLVVP 324