Pairwise Alignments

Query, 310 a.a., Phenylacetate ABC transporter, permease protein 2 from Variovorax sp. SCN45

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  174 bits (442), Expect = 3e-48
 Identities = 107/318 (33%), Positives = 168/318 (52%), Gaps = 22/318 (6%)

Query: 4   SRLRALGATALILAVLPFLLPNNFMLDIAIRIAFAAVAVIGLNLLMGFAGQISIGHAGFL 63
           SRLR +    +++A++  +  N ++L + I      +  +GLN+++G AG + +G+  F 
Sbjct: 93  SRLRWIIPALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFY 152

Query: 64  AIGAYGSAIATSRFGWPPLIAIAAAGIASAILAWLVAKPMLRLKGHSLTMATLGFGVIVN 123
           AIGAYG A+     G      +  A IA+A+   ++  P+LR+ G  L + TLGFG I+ 
Sbjct: 153 AIGAYGLALGYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIR 212

Query: 124 IVLINEVAVTGGPDGMAVPPLEVAGLALTDLR-------HWYAG-----------AAIVL 165
           +VL N ++ TGGP+GM VP     GL             H + G             IVL
Sbjct: 213 LVLNNWLSFTGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVL 272

Query: 166 WLAILLSL----NLYDSPCGRALRGLHGSEVAARVVGVDVALFKTRAFVMSAVMASVSGS 221
           +L +L  L     L   P GRA   L   E+A R +G++  L K  AF + A  A ++G 
Sbjct: 273 FLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGV 332

Query: 222 LTGHYVGFISPQMASFAHSVELATMVVLGGMASTFGAVLGSAVLTMLPQLLGGLHGYESI 281
               Y GF++P   +F  S  +  +VVLGGM ST G V+ + VLT+ P+LL     Y  +
Sbjct: 333 FFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVL 392

Query: 282 LFGLILMLTMMFLPRGIV 299
           LFG+++++ M++ PRG++
Sbjct: 393 LFGVLMVVMMIWRPRGLI 410