Pairwise Alignments

Query, 500 a.a., Circadian clock protein KaiC from Variovorax sp. SCN45

Subject, 460 a.a., DNA repair protein RadA from Escherichia coli ECRC62

 Score = 53.1 bits (126), Expect = 2e-11
 Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 44/232 (18%)

Query: 16  TGVPGLDDVTAGGLPGGHVYLVEGTPGAGKTTLGLQFLLQGRSLGQKGLYVTLSETSEEL 75
           TG    D V  GG+  G   L+ G PGAGK+TL LQ L +  +   K LYVT  E+ +++
Sbjct: 79  TGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCK-LAQQMKTLYVTGEESLQQV 137

Query: 76  AQGAASHGWDLAGVEIFDLVSDDDLSAEAEQSILQPSDFELGETIRGVMALVEREKPSRV 135
           A  A   G           +  D+L+  +E SI Q            +  + E E+P  +
Sbjct: 138 AMRAHRLG-----------LPTDNLNMLSETSIEQ------------ICLIAEEEQPKLM 174

Query: 136 VFDSLSELRLLSQSS-----LRYRRQILALKRFFLKHGCTVLLL----DDKSAASGDMHL 186
           V DS+  + +    S      + R     L RF    G  ++++     D S A   +  
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLE 234

Query: 187 HSIAHGVI---QLEQNTGTYGPDKRRMRVVKLRGVSFREGEHDFTLTRGGLR 235
           H I   V+     +    T    K R   V   GV        F +T  GLR
Sbjct: 235 HCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGV--------FAMTEQGLR 278



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 255 SSGNPDLDRLLGGGLTPGTNLLFAGPAGVGKTTTAVSCVRASLQLGGKAAIFLFDEGTKT 314
           S+G  + DR+LGGG+ PG+ +L  G  G GK+T  +  +   L    K      +E  + 
Sbjct: 78  STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL-CKLAQQMKTLYVTGEESLQQ 136

Query: 315 LLTRSRALGMGID 327
           +  R+  LG+  D
Sbjct: 137 VAMRAHRLGLPTD 149