Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 335 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  119 bits (298), Expect = 1e-31
 Identities = 75/264 (28%), Positives = 139/264 (52%), Gaps = 12/264 (4%)

Query: 60  MQANLKKAVGEQIRIDYFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDL 119
           M   L++    ++ +  +PN QLG E ++V+ +++GS+ M    S++  +  P++ +L  
Sbjct: 56  MAKRLEEKSDGKLTMKVYPNAQLGNERELVELLQIGSLGMTKVSSAVMESFAPKIQVLSQ 115

Query: 120 GYLFDSYDHVARAIDAGVGAKLNDMLARSTGCQIITWGAHY---GARNVYTK-QPVKSLA 175
            YLF    H  R ++  +G +L      + G Q    G  +   G+R+ YTK +PV+S  
Sbjct: 116 PYLFRDNGHRERVLNGEIGKRL-----LNEGTQFWLKGLCFYDAGSRSFYTKDKPVESPE 170

Query: 176 DIRNVKLRVLPTPAFIETFKIMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNE 235
           D+   K+RV+ +   I      G  PTP+S+GELY A Q G+VDG E++  +V++++  E
Sbjct: 171 DLVGKKIRVMESNTAINMVNSFGGSPTPVSWGELYTALQQGIVDGAENNPPSVISSRHYE 230

Query: 236 VVKHCWMTEHLFSPMVCVAGKRAMDRVPAALRPAFLKAAADSTLQQRQIGNERSQQAIDD 295
           + K   + EH   P + +   +  DR+    +    +AA +S   Q +I  E  ++++  
Sbjct: 231 ICKFYSLDEHTAVPDMLIVSTKVWDRLSEEEQNWLQEAADESAKFQYKIWAEAEEESMRQ 290

Query: 296 LKKTGITFTPMAKSERDQVRKEME 319
           L+  G+T T   + +++  RK +E
Sbjct: 291 LEAEGVTIT---RPDKEPFRKAVE 311