Pairwise Alignments

Query, 317 a.a., ABC transporter, permease protein 1 RSc1751 from Variovorax sp. SCN45

Subject, 286 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  191 bits (484), Expect = 2e-53
 Identities = 99/258 (38%), Positives = 158/258 (61%), Gaps = 2/258 (0%)

Query: 3   VEFFVISLLNGVSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMLGAYFAFTISGILG-F 61
           ++ ++  LLNG+  G++ F+++ GLT+IF ++  +NFAH +F++LGAY  +T   + G F
Sbjct: 2   LDLYLFQLLNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAVAVTGNF 61

Query: 62  WPALVIAPLLVFALGAAFERYCLRRVHKFGHVPELLVTFGLSYLILEIVQLVWGRSTVPY 121
           W AL+IAPL+V AL  A ER  ++R++   H  ++LVT G++ +I E   L+WG      
Sbjct: 62  WLALLIAPLVVAALAWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGPVGKNI 121

Query: 122 GLPTALQGPLFSLYGTQFPKSRSFIMLVAVLMLVSVWLLLTRTRIGLVIQAALKHPDMVE 181
            +P  L+G L  L    +P  R F++  A L+ + +WLLL RTR G +++A  +  + V 
Sbjct: 122 AVPPELRGVLI-LGDFIYPYYRLFLIGFAALIGIGLWLLLERTRFGALVRAGSESTETVS 180

Query: 182 ALGHNVPRVFMLVFGGGAALAGLAGVVGGNTYVTEPAMAGSVGSIIFVVVVVGGMGSLAG 241
            LG N+ R+F L F  G  LAG+AGV+       +P +   +  I FVVVV+GGMGS  G
Sbjct: 181 LLGTNIFRLFSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIAFVVVVIGGMGSFGG 240

Query: 242 AFLASLIIGIVQTFAVAM 259
           A +  L++G+VQ+   ++
Sbjct: 241 ALVGGLLVGVVQSMMTSL 258