Pairwise Alignments

Query, 410 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 88/359 (24%), Positives = 144/359 (40%), Gaps = 31/359 (8%)

Query: 9   AAAVIAATATGALAQKGET--VKIAWLDPLSGLMAAVGTNQLKTFQFFAEEFNKKNAA-- 64
           A    A  A  A A  G+T  VKI  + P SG +A +G +     +   E+ N K     
Sbjct: 32  APTAAAPAAAPAPAPAGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIG 91

Query: 65  --GVKFEIIGIDNKLSPQETTSALRSALDQGARYIVQGNGSGPALAIIDALEKNNARNPG 122
               KFE++  D+   P++ T+  +  +D+    +V    SG  +        ++A  P 
Sbjct: 92  DKTAKFELVAEDDAGDPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLY--SDAGIP- 148

Query: 123 KEALYLNYAAVDPELTNAKCSYW----QYRFDADTSMKMEALTTYMKDQPDIKKVYIIGQ 178
                     + P  TN K +       +R  AD +     L  Y  +    K + +I  
Sbjct: 149 ---------QISPSATNPKYTRQGFKTTFRVVADDTQLGGTLGKYAVETLKGKNIAVIDD 199

Query: 179 NYAHGQQVSKYAKEDLKHKRPDIQIVGDDLHPLAQVRDFAPYIAKIKASGADTVITGNWG 238
             A+GQ V++  ++  K       IVG +     +  DF   + K+K++  D +  G   
Sbjct: 200 RTAYGQGVAEEFEKSAK--AAGATIVGHEF-TTDKSTDFNAILTKLKSAKPDVLFFGGMD 256

Query: 239 SDLALLIKAANDSGLNVKFYTYYAVTTGTPTAMGAASDGKVYQVGYAHYNMGGDMQKYAE 298
           +    ++K     GLNVKF     + TG    +   + G+   V      + GD ++  E
Sbjct: 257 AVGGPMLKQVKQLGLNVKFMGGDGLCTGELPKLAGDAIGEDMVVCAEAGGVDGDFKQPLE 316

Query: 299 DFKKKFND------DLYTTDVYTVFQALTEAFVKTKSTDPVKVAAAMEGMKFKSFNGDV 351
           DFK KF         +Y   VY     L EA VK  S+DP K    +  +++K   G +
Sbjct: 317 DFKAKFKTKNGVEVQIYAPYVYDAVNVLAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPI 375