Pairwise Alignments

Query, 410 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score = 70.5 bits (171), Expect = 8e-17
 Identities = 87/375 (23%), Positives = 151/375 (40%), Gaps = 24/375 (6%)

Query: 11  AVIAATATGALAQKGETVKIAWLDPLSGLMAAVGTNQLKTFQFFAEEFNKKNAA-GVKFE 69
           A+  ATA G  +     VKI    P++G  AA G   +K  Q  A++ N      G K  
Sbjct: 12  ALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKIV 71

Query: 70  IIGIDNKLSPQETTSALRSALDQGARYIVQGN----GSGPALAIIDALEKNNARNPGKEA 125
           ++  D+   P++  +     +DQ     V G+     + PA  + D              
Sbjct: 72  LVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAG----------V 121

Query: 126 LYLNYAAVDPELTNAKCSYWQYRFDADTSMKMEALTTYMKDQPDIKKVYIIGQNYAHGQQ 185
           + +   + +P++T    S   +R       +      Y+ D    KKV ++     +GQ 
Sbjct: 122 IAITPGSTNPQVTERGLSA-MFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQG 180

Query: 186 VSKYAKEDLKHKRPDIQIVGDDLHPLAQVRDFAPYIAKIKASGADTVITGNWGSDLALLI 245
           ++   K  L+ KR    ++ + L      +DF+  + KI+++GAD V  G    +   L+
Sbjct: 181 LADATKAQLE-KRGVKPVLYEGL--TRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLV 237

Query: 246 KAANDSGL-NVKFYTYYAVTTG--TPTAMGAASDGKVYQVGYAHYNMGGDMQKYAEDFKK 302
           +   + GL +VKF +   + T     TA GA     VY    A   +  D +   E+F+K
Sbjct: 238 RQLREQGLKDVKFMSDDGIVTDELVSTAGGAQYVDGVYMTFGADPRLLPDSKAVVEEFRK 297

Query: 303 KFND-DLYTTDVYTVFQALTEAFVKTKSTDPVKVAAAMEGMKFKSFNGDVELRKTDHQLQ 361
              + + YT   Y   QAL  AF   KS      A  ++    ++  G+ +         
Sbjct: 298 AGTEPEGYTLYAYASLQALAAAFNGAKSNKGEDAAKWLKANPVQTVMGEKKWDSKGDLTV 357

Query: 362 QGLYIAKWEKASAKY 376
               + +W+K + KY
Sbjct: 358 SDYVVYQWDK-TGKY 371