Pairwise Alignments

Query, 410 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 82/375 (21%), Positives = 152/375 (40%), Gaps = 22/375 (5%)

Query: 1   LKFALKIAAAAVIAATATGALAQKGETVKIAWLDPLSGLMAAVGTNQLKTFQFFAEEFNK 60
           LK  L + A   +   A  A A +  T     L  +SG  A+ G       +    E  +
Sbjct: 7   LKAGLALGALGSLPLGAHRAFADQPLT--FYGLKSMSGAFASYGKYADMGSRLAIAEHPQ 64

Query: 61  KNAAGVKFEIIGIDNKLSPQETTSALRSALDQ-GARYIVQGNGSGPALAIIDALEKNNAR 119
                +K+++I  D + +  +    ++ A+ Q GAR+      S  ALA+   + K    
Sbjct: 65  LLGHPLKYKVI--DTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGG- 121

Query: 120 NPGKEALYLNYAAVDPELTNAKCSYWQYRFDADTSMKM-EALTTYMKDQPDIKKVYIIGQ 178
                 +++     D E+T   C+   +R+   T   + E L    +  P  K+ Y I  
Sbjct: 122 ------VFMTPVGAD-EITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITP 174

Query: 179 NYAHGQQVSKYAKEDLKHKRPDIQIVGDDLHPLAQVRDFAPYIAKIKASGADTVITGNWG 238
            Y  G  +   A++        ++ +G+  H L Q ++F+ Y+    A+  D ++  N+G
Sbjct: 175 QYVFGDALLDNARKVFAEL--GVEHIGNSYHSL-QEQEFSGYLTNAIAAKPDVLVLLNFG 231

Query: 239 SDLALLIKAANDSGLNVKFYTYYAVTTGTPTAMGAASD--GKVYQVGYAHYNMGGDMQKY 296
           S  +  ++ A + G+  +       + G        SD    VY      + +   + K 
Sbjct: 232 SQASNALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKL 291

Query: 297 AEDFKKK---FNDDLYTTDVYTVFQALTEAFVKTKSTDPVKVAAAMEGMKFKSFNGDVEL 353
                +K    N +      Y   + + EA VK  S D   V+AA++GM+F+   G+  +
Sbjct: 292 LVAATRKAYGINPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELI 351

Query: 354 RKTDHQLQQGLYIAK 368
           R  DHQ+ +  Y+ +
Sbjct: 352 RPGDHQVLKDYYLLR 366