Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score = 68.6 bits (166), Expect = 3e-16
 Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 18/345 (5%)

Query: 12  AMLVSFTAAFAQKGETVKIAWLDPLSGLMAAVGTNQ-LKTTQFLAEEFNKKNQSGVKFEV 70
           AM+++  A  +   +T+KI    P +G +   G  Q +   Q +A+   K    G   E 
Sbjct: 14  AMVLAGVAGHSFAADTIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKGGVDGKMLEA 73

Query: 71  IGIDNKLSPQETTAALRSAQDQGARYIMQGNGSGPALAIIDAIEKNNSRNPGKELLYMNY 130
              D+   P++  A      + G ++++    S       D  E          ++ +  
Sbjct: 74  KEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEG-------VIMITP 126

Query: 131 AAVDPDLTNSKCSYWHFRVDADTSMKMEALTTWMKDQADIKKVYLLGQNYAHGVQVAKYA 190
           AA  P++T ++     FR     S +  A   ++ D    K V +L     +G  +A   
Sbjct: 127 AATSPEIT-ARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAV 185

Query: 191 KEDLKVKRPDIQIVGEDLHPLAQVRDFSPYIAKIKASGADTVITGNWGSDLSLLIKAAND 250
           K+ L+ K   + +  E L+  A  +DFS  I K+K +  D V  G +  +L L+++ A +
Sbjct: 186 KQTLEKKGTKVAVF-EGLN--AGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKE 242

Query: 251 SGLNVKFLTYYAPG--AGTPTAMGATSDGKVYTVAYAHYNMGGEIQQLLNGYKKRMNDDL 308
            GLN KF+     G  + +  A GA S+G + T+  + ++     + ++  + K   D  
Sbjct: 243 KGLNAKFMGPEGVGNDSISQIAQGA-SEGLLVTLPKS-FDTDPANKAIVEEFAKNKQDPT 300

Query: 309 TQ--ASIYHVFALLDAAFAKTKSTDPVKVAAALEGMKIKSFNGEV 351
                  Y    ++       KS D  KVA A+     K+  G++
Sbjct: 301 GPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTPTGDL 345