Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

 Score = 60.5 bits (145), Expect = 8e-14
 Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 14/343 (4%)

Query: 12  AMLVSFTAAFAQKGETVKIAWLDPLSGLMAAVGTNQLKTTQFLAEEFNKKNQ-SGVKFEV 70
           AM+++  A+ +   +T+KI    P +G +   G  Q    +   ++ N      G   E 
Sbjct: 10  AMVLAGVASHSFAADTIKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAAGGVDGKMLEA 69

Query: 71  IGIDNKLSPQETTAALRSAQDQGARYIMQGNGSGPALAIIDAIEKNNSRNPGKELLYMNY 130
              D+   P++  A      + G ++++    S       D  E          ++ +  
Sbjct: 70  KEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEG-------VIMITP 122

Query: 131 AAVDPDLTNSKCSYWHFRVDADTSMKMEALTTWMKDQADIKKVYLLGQNYAHGVQVAKYA 190
           AA  P++T ++     FR     S +  A   ++ D    K V +L     +G  +A   
Sbjct: 123 AATSPEIT-ARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQYGEGIATAV 181

Query: 191 KEDLKVKRPDIQIVGEDLHPLAQVRDFSPYIAKIKASGADTVITGNWGSDLSLLIKAAND 250
           K+ L+ K   + +  E L+  A  +DFS  I K+K +  D V  G +  +L L+++ A +
Sbjct: 182 KQTLESKGTKVAVF-EGLN--AGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQE 238

Query: 251 SGLNVKFLTYYAPGAGTPTAMGATSDGKVYTVAYAHYNMGGEIQQLLNGYKKRMNDDLTQ 310
            GL  KF+     G  + + +   +   +       ++     +++++  K    D    
Sbjct: 239 KGLKAKFMGPEGVGNDSISQIAQNASEGLLVTLPKSFDADPANKKIVDAIKADGKDPSGP 298

Query: 311 --ASIYHVFALLDAAFAKTKSTDPVKVAAALEGMKIKSFNGEV 351
                Y    L+     K  S D  KVA A+     K+  G++
Sbjct: 299 FVFPAYSAVELIAQGIKKAGSDDTDKVAEAIHKGTFKTPTGDL 341