Pairwise Alignments

Query, 323 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

Subject, 468 a.a., putative Nitrate ABC transporter, periplasmic nitrate-binding protein from Pseudomonas putida KT2440

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 16/220 (7%)

Query: 72  VTTRNFPNGPDLNEAFISGALDVGIYGDTPA-------IVARSRGLESQLIGFDAVGMNV 124
           V  +NF +G  L    ++G LD G   D P        + A  R L   ++     G   
Sbjct: 67  VEWKNFTSGAPLTNEMVAGKLDFGAMADFPGSFNGVAHLDAGKRSLFISVLSGSVHGSGN 126

Query: 125 WLLTP-RNGARSVKELDGKSIGVARGSYMHRYVLGLLKEHGL--QKSVKVIHMFPRDGEA 181
            ++ P  +  +S+ EL GK+I V   S  H  +L  +   G   QK V++I   P    +
Sbjct: 127 GIVVPAASSVQSLAELKGKTISVPFASTAHGMLLRAVAAQGWDPQKDVRIIAQAPEIAGS 186

Query: 182 ALDQGSIAAFAAQIDVGPLLASRGY--PVIDEAEQH-PTLRGTSVIVASSKLLAAAPGVP 238
           AL    I A A  +    L  +RG+   + D A+ + PT  G  V    +K     P V 
Sbjct: 187 ALRSNRIEAHADFVPFAELFPNRGFARKIYDGAQANAPTFHGALVDADYAK---KYPEVV 243

Query: 239 AAWTRARRTALQEIRRDNAAYYAFHAEVSGFPLDVVKVSH 278
            A+ RA   A + I      Y     +V+G   +V  + H
Sbjct: 244 TAYLRASLEADRLIAAQPEKYSELIEKVTGIEAEVNYLFH 283