Pairwise Alignments

Query, 351 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 365 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  273 bits (698), Expect = 5e-78
 Identities = 146/349 (41%), Positives = 217/349 (62%), Gaps = 7/349 (2%)

Query: 3   NVAQGPIAW-RSELWGSPLRALATVLLLALLAWGGFHVVEWGVVHAVFRPDAEACRAVQH 61
           N   GP+AW R+ L+ S L  L T+L   L+      ++ W ++ A +     A    + 
Sbjct: 14  NKVFGPMAWMRANLFSSWLNTLLTLLAFYLIYLVVPPILSWAIIDANWVGTTRA-DCTKE 72

Query: 62  GACWGVVAEKWRPMLFGRFPYEEQWRPAVAV---VVLSAVTVLSAWPRSWRWWLAPLWIV 118
           GACW  + +++   ++G +P + +WR  + V   +V  A   +S + R   + L  L + 
Sbjct: 73  GACWVFIQQRFGQFMYGYYPGDLRWRVDLTVWLAIVGVAPLFISRFQRKAVYGLGFLVLY 132

Query: 119 ALLLFVLLMRGGVLGLSGVPTSRWGGLPLTIGLAVVGLALAFPLALLLALGRRSGWPVVR 178
            ++ F LL  GG+ GL+ V TS+WGGL LT+ +A VG+A A PL ++LALGRRS  P +R
Sbjct: 133 PIIAFFLL-HGGIFGLTNVATSQWGGLMLTLVIATVGIAGALPLGIMLALGRRSNMPAIR 191

Query: 179 TLSASYIELVRGVPLISVLFMASFLLPLLWPAGWQPDVLVRVLAGLTLFVAAYLAEIIRG 238
            +  ++IE  RGVPLI+VLFM+S +LPL  P G   D L+R L G+ LF +AY+AE++RG
Sbjct: 192 VVCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMGIDKLLRALIGVILFQSAYVAEVVRG 251

Query: 239 GLQAVPRGQTEVAMALGFGRWPVQRDIVLPQALRLVVPALTNSVVGTLKDTSLVTVVGLF 298
           GLQA+P+GQ E A A+G G W     ++LPQAL++V+P + N+ +   KDTSLV ++GLF
Sbjct: 252 GLQAIPKGQYEAAAAMGLGYWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLF 311

Query: 299 ELTGALGLALGGDPTWRPFYLEGYLFIAAVYWVLCFGLSRYSVWLEKRL 347
           +L  ++  A   DP W     EGY+F A V+W+ CFG+SRYS+ LE +L
Sbjct: 312 DLLNSVKQA-AADPKWLGMATEGYVFAALVFWIFCFGMSRYSIHLEHKL 359