Pairwise Alignments

Query, 385 a.a., Macrolide-specific efflux protein MacA from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  105 bits (261), Expect = 3e-27
 Identities = 100/366 (27%), Positives = 161/366 (43%), Gaps = 38/366 (10%)

Query: 25  VAFVGLSPARKPEYLTASVQRTDL-----ENAVLAT---GVLQALKQVEVGAQVSGQLKS 76
           +A  G  PA + +    +    ++     E   LA    G ++ ++  EV A+V G +  
Sbjct: 17  IALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLH 76

Query: 77  LKVVLGQTVKKGDWLAEIDPVISQNTLAQEQAKLDNLQAQKLAKEVRIRQAQLSWTRQQE 136
            +   G  VK GD L +IDP   +  LA+ +A L   QA +   + R++       R + 
Sbjct: 77  KRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVK-------RYEP 129

Query: 137 MLAQDAAAKQDMESADAELRALRADGVSLDAQIRQQRLALASAQTNLSYTRIVAPIDGDV 196
           ++  +A ++QD +SA AELR       S  A +R  +  + +A+ NL Y  + API G +
Sbjct: 130 LVKIEAVSQQDFDSATAELR-------SAGAAVRSAQADVQAARLNLGYATVTAPISGRI 182

Query: 197 VSISTLEGQTVVASFQVPTLMKLADLSTMTVKAQVSEADVVRVK---------AGQPVYF 247
                 EG  +V   +   + ++  L  + +    S AD +R++         A      
Sbjct: 183 GRALATEG-ALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLT 241

Query: 248 TILGDPDKRYYGTLRAVQPSPEKINNAVFFNALFDVPNPDRTLRVDMTAQVAIMLGEAKQ 307
             +   D +  G L     S ++    V     FD  N D TL   M  +V    G    
Sbjct: 242 AQVEGTDFQRSGELMFTDVSVDRGTGQVILRGRFD--NADGTLLPGMYVRVRTPQGTDNH 299

Query: 308 ALVVPLTALGTRDKDGRQEVRVLKADQSV-EKRMVRVGISNNFQAQVLEGLKEGDKVITG 366
           A++VP  A+  R  DG  + RVL A   + E R VR G+    + Q+ EGL+ GD+VI G
Sbjct: 300 AILVPQRAV-QRGSDG--QARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVG 356

Query: 367 DASALA 372
             + LA
Sbjct: 357 SPAGLA 362