Pairwise Alignments

Query, 243 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., glutamine ABC transporter permease from Pseudomonas simiae WCS417

 Score =  107 bits (266), Expect = 3e-28
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 14  LLWGAFPQGPLG-GAALTVLLSVGSAVASAVLGLAWGIGLASARGWARAVLTLALAFFRA 72
           LLW + PQ  LG GAA T+ +S  S   S V G+ +G+          AVL + L  FRA
Sbjct: 8   LLWVSLPQ--LGKGAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELFRA 65

Query: 73  IPVLMLIFWTYFLLPFALGISVPGVLSVMCALSLVGGAYLAHAVNAGIRGVGQGQWAAGL 132
           IPVL+ ++  +F LP   G+S+P     +  LSL G + +   V   +  + +GQ  AGL
Sbjct: 66  IPVLVWLYLLFFGLPIFFGLSLPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQREAGL 125

Query: 133 SLGLTRWGTLRFIVLPQALRMMLPSFVNQWVTLVKDSSLAYIVGVGELSFVASQVNARTM 192
           S+GL+      +++LPQAL+ M P  +N +  ++K SSLA ++GV ++  V  Q+  RT 
Sbjct: 126 SIGLSDPQLYGYVLLPQALKRMTPPTLNVYTRIIKTSSLAVLIGVVDVIKVGQQIIERT- 184

Query: 193 VYPAEIFMLVGAIYWLLCTGLDRLANMAVRR 223
                I+ ++   ++ +C  L   + +  RR
Sbjct: 185 YESVLIYGVLFLFFFFICYPLSAASKVLERR 215