Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  123 bits (309), Expect = 4e-33
 Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 15/215 (6%)

Query: 15  LGWLLDGWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLVQL 74
           LG L+ G  TTLW+S++      ++G+     R SS P L   +  YV L R TPLLVQ+
Sbjct: 114 LGPLMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLVQI 173

Query: 75  FFWYFGAPAVLPEAVREWVYAGHVLSFEL-LSALVGLTLYAAAYVGEDIRSGIRGVPAGQ 133
           F +YF              + G VL+     + +  L+L+  AYV E +R+G++ +  GQ
Sbjct: 174 FIFYF--------------FIGTVLNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQ 219

Query: 134 ALAASALGFTRAQVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVELSYASRQV 193
             AA +LG + +Q M  VVLPQA +  LPPL GQ++++VK+TSL   + + EL  + R+V
Sbjct: 220 NEAARSLGLSASQSMRHVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREV 279

Query: 194 EAETFKTFQAFGFATLLYIATIGAIELLAAWTARR 228
              +F  F+       LY+     +  +A+   RR
Sbjct: 280 ITTSFSPFEILFCVAGLYLLINLPLSKMASRLERR 314