Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 320 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  126 bits (316), Expect = 6e-34
 Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 15/214 (7%)

Query: 16  GWLLDGWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLVQLF 75
           G L  G  TTLW+S++  A   V+G+F    R S+ P L   +  YV L R TPLLVQ+F
Sbjct: 116 GPLAWGLWTTLWISVVSGALGLVIGLFAGLCRLSNNPTLRDLSTVYVELVRGTPLLVQIF 175

Query: 76  FWYFGAPAVLPEAVREWVYAGHVLSFEL-LSALVGLTLYAAAYVGEDIRSGIRGVPAGQA 134
            +YF              + G VL+     + +  L L+  AYV E +R+G++ +  GQ 
Sbjct: 176 IFYF--------------FIGTVLNLSREFAGVAALALFTGAYVAEIVRAGVQSIAKGQN 221

Query: 135 LAASALGFTRAQVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVELSYASRQVE 194
            AA +LG    Q M  V+LPQA +  LPPL GQ++++VK+TSL   + + EL+ + R+  
Sbjct: 222 EAARSLGLNAGQSMRHVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKSGREAI 281

Query: 195 AETFKTFQAFGFATLLYIATIGAIELLAAWTARR 228
             +F TF+ +     LY+     +  +A+   RR
Sbjct: 282 TTSFSTFEIWFCVAGLYLLINLPLSHIASRLERR 315