Pairwise Alignments

Query, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 2e-27
 Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 18  FTLGGAAWADRLDDVRKAGVLRVAAFDGNPPFGYIDPASKKQVGHDIDLATEFAKSLGVK 77
           F L  AA      +   A  LR+      PPF   D AS   VG D D+       + V+
Sbjct: 7   FLLAAAATLVMSANAMAAEKLRMGIEAAYPPFNNKD-ASGNVVGFDKDIGDALCAKMKVE 65

Query: 78  IELVPTNPANRIPLLTSGKVDVVFASFTITDERAKAVDFTTPYFLVGQQFLAKKGV--LK 135
             +V ++    IP L + K D + +S +ITDER +AVDFT PY+    QF+A K V    
Sbjct: 66  CSVVTSDWDGIIPALNAKKFDFLVSSLSITDERKQAVDFTNPYYSNKLQFIAPKNVDFKT 125

Query: 136 DAAQIKDIRIGTEKGTTMESNLRKNYPDAKVVLYDDSPFALAALRNGNVQAITNDGVKLT 195
           D   +K   IGT++ T   + L  NYPD ++ LYD    A   L +G +  I  D   + 
Sbjct: 126 DKESLKGKVIGTQRATLAGTYLEDNYPDVEIKLYDTQENAYLDLVSGRIDGILADKY-VQ 184

Query: 196 AQWNAIPDKEKYEI--PPITVSKEYLGAAVPKGEARLLEALNTWLVDSEKNGRALAIYDT 253
            +W    D   +E    P+ +  + +G AV KG+ +L + LN  L + + +G    I D 
Sbjct: 185 YEWLKSKDGSNFEFKGEPV-MDSDKIGIAVRKGDTKLRDDLNKALAEIKADGTYKKINDK 243

Query: 254 WF 255
           +F
Sbjct: 244 YF 245