Pairwise Alignments

Query, 281 a.a., Alkanesulfonate ABC transporter permease protein SsuC from Variovorax sp. SCN45

Subject, 260 a.a., putative Nitrate ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  171 bits (434), Expect = 1e-47
 Identities = 94/236 (39%), Positives = 131/236 (55%), Gaps = 4/236 (1%)

Query: 42  IVFWQIASS----LGWLSTRVLPAPVDMVKAAWNLTVSGELWTHVKVSAGRALAGLAIGG 97
           ++FWQ+A++    LG L+   +P P  ++ AAW L  S  L  H+  S  R  AG A   
Sbjct: 19  LLFWQVAANVKMDLGLLTFTYVPTPKAVLDAAWQLLTSSTLLAHLGSSLARVFAGYATAA 78

Query: 98  GAGLALGLLTGSVKFAETLLDSTIQMVRNIPALALIPLVILWFGIDESAKLFLISVSVFF 157
             G+ALGLL G  K+AE  L   ++++R IPA+A IPL IL F   E + +F+      F
Sbjct: 79  LVGVALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSSELSMVFITFTGALF 138

Query: 158 PIYLNTFHGIRNVDPQLIEMGRTYGLSRWQLYREVILPGALSSILVGLRFSLGLMWVILI 217
           PI LNT HG+  VDP+L+   R+ G  RW + REV+LPGAL SI+ GL   +G  W  L+
Sbjct: 139 PILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALPSIVTGLAIGMGTSWFCLV 198

Query: 218 VAETISAQAGIGYLTMNAREFLQTDIVLVGILLYALLGKLADLFARGLEQWWLRWH 273
            AE IS Q GIGY T  +        ++VG+LL  +LG  +    + L      W+
Sbjct: 199 TAEMISGQFGIGYYTWESYTLQNYPDIVVGMLLIGVLGMGSSALVKRLGALATPWY 254