Pairwise Alignments

Query, 318 a.a., Alkanesulfonate ABC transporter substrate-binding protein SsuA from Variovorax sp. SCN45

Subject, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

 Score =  230 bits (587), Expect = 3e-65
 Identities = 135/310 (43%), Positives = 181/310 (58%), Gaps = 6/310 (1%)

Query: 8   RRRLIQGVAAAVA---LPSFAALAQAPARQFRIGNQK-GYLTLLKGRGTLEKRLAPLGVS 63
           RR LI G+ A+VA   LP   A+A   AR  RIG QK   + +LKG G LEK LAP GV 
Sbjct: 12  RRLLIGGLLASVASALLPWSEAIAD-DARTLRIGYQKFNSINILKGSGALEKALAPQGVK 70

Query: 64  VKWTEFTAGPVQLEALNVGSIDFGDVGEAPPIFAQAAGAPLAYVGATVVRPQSEAVLVPK 123
           V W EF AGP  LEAL+ G+ID G   +AP +FAQAAG P+ Y+ A    P+   ++V +
Sbjct: 71  VSWHEFAAGPQLLEALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLVVRE 130

Query: 124 ASAIKTVAELKGKKIALNKGSNVHYFIVKLFEKHGLSYADLNLVYL-PPADARAAFEKGS 182
              + +V +LKGK++A  +G N  Y +    ++ GLSY D+   Y+   ADA AA + GS
Sbjct: 131 QDHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQSGS 190

Query: 183 VDAWVIWDPFLAAAEKSLDARILADATGVVGNRAYYFSSLDYVAKNADVLAIAIEELNKI 242
           V A  +WDPFLAAAE     + L D +G+  NR +Y S+  +  ++  +L     EL K+
Sbjct: 191 VQAVTLWDPFLAAAESQPGLKNLRDGSGLSNNRTFYLSTASFADQHRALLKTFFAELGKV 250

Query: 243 DVWGAANKAELAGELAALWGLPKPVAELSVNRSAYGTTPITKAILAEQQKIADTFFDLKL 302
             W  A  AE+A  LA   G+   V E++  R  Y    IT  I+AEQQK+ADTF  L L
Sbjct: 251 SQWANAKPAEVAALLAPQLGISTQVLEVASERRNYNAVAITPQIVAEQQKLADTFQGLGL 310

Query: 303 IPKKINVLEA 312
           IP+K+ V EA
Sbjct: 311 IPRKLQVAEA 320