Pairwise Alignments

Query, 401 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Variovorax sp. SCN45

Subject, 308 a.a., periplasmic murein D-alanyl-D-alanine endopeptidase from Pseudomonas putida KT2440

 Score =  204 bits (518), Expect = 4e-57
 Identities = 114/255 (44%), Positives = 165/255 (64%), Gaps = 3/255 (1%)

Query: 139 LDLKSSVALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEAHLPNEELITITQDDV 198
           L L S  AL+ID ++++ L+S +   V+PIAS+TKLMT +++ +A LP +E++T+T  + 
Sbjct: 39  LHLASGSALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANN 98

Query: 199 DTEKRSSSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSIMNAKAKMLG 258
              K   SR+ +G+ L R E L + LMSSENRAA++L   YPGG   F+  MNAKA+ LG
Sbjct: 99  PEMKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLG 158

Query: 259 MKDTRYVEPTGLSSRNQSSAQDLALLVNAAYSDATVRSLSTSPEYQV--EVGNRMLQFNT 316
           M  TRYVEPTGLS++N S+A+DLA L+ A+     +  LST+ E  V     N  L F  
Sbjct: 159 MAHTRYVEPTGLSTQNVSTARDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFRN 218

Query: 317 TNRLVKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAERVRR 376
           T+ LV   +W+I + KTG+ +EAG CLV+  ++  R + MV LD+ GK++  ADA R+R+
Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMRQ 278

Query: 377 WVEATHSISGTPAAS 391
           W+E T S    PA +
Sbjct: 279 WLE-TGSAKPAPAVA 292