Pairwise Alignments

Query, 188 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Variovorax sp. SCN45

Subject, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 3   TELELSDFLKSVERRAFKRSVYHVRDEEAALDIVQDSMMKLAQHYGDKPANELPMLFQRI 62
           ++LEL   +   + R F   +  V D   A D++Q+  ++ A++    P         ++
Sbjct: 7   SDLELIYGVHRADLRRFL--IARVGDAAEADDLLQELWVR-ARNVAAGPIGNGRAYLYKM 63

Query: 63  LSNCTLDWFRRQKTRRALFSNLSDFDSVDDDGDFDLLENFVSPTDSRESESAEDTTRRAQ 122
             N  LD  R Q+ R A     +D ++       D     + P D   S++AED     +
Sbjct: 64  AQNLVLDRLREQQRRMARERRWNDQET-------DFTAPGIDPVD--RSQTAEDQIIARE 114

Query: 123 VFHEIEEQIAALPGRQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCSRAVHALSKAL 181
               I+  +  LP   R AF +     +   E AA +G S+  V+ H + A+  L +AL
Sbjct: 115 EVQRIKTALETLPEGARRAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAMKYLRRAL 173